Lambic microbial community profiling using terminal restriction fragment length polymorphism

NICHOLAS A. BOKULICH (1), Charles W. Bamforth (2)
(1) Department of Viticulture and Enology, University of California, Davis, CA; (2) Department of Food Science and Technology, University of California, Davis, CA

This work followed the microbial succession of yeast and bacteria in Belgian and American lambic-style, spontaneously fermented beers using terminal restriction fragment length polymorphism (TRFLP) as a tool for high-throughput community profiling, accompanied by culture-dependent tests. It was found that, generally, both American and Belgian beers followed the same progression, dominated by enterobacteriaceae and a range of oxidative yeasts in the first month of fermentation; these fermentations then ceded to Saccharomyces spp. and Lactobacillus spp. for the following year. After one year of fermentation, Brettanomyces bruxellensis was most often identified as the dominant population of yeast (occasionally accompanied by minor populations of Candida spp., Pichia spp., and other yeasts) and lactic acid bacteria (LAB) remained dominant, though various aerobic bacteria became more prevalent. This work demonstrates the utility of TRFLP as a technique for community analysis in beer and other fermented beverages.

Nicholas Bokulich is a candidate for an M.S. degree in the Department of Viticulture and Enology at the University of California, Davis. He received his B.A. degree in microbiology and zymurgy at Hampshire College in 2008 before going to work for Anderson Valley Brewing Company in Boonville, CA.

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